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  1. eHDPrep::example_data
    Example data for eHDPrep
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1000 x 12
  2. eHDPrep::example_edge_tbl
    Example ontology as an edge table for semantic enrichment
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|25 x 2
  3. eHDPrep::example_mapping_file
    Example mapping file for semantic enrichment
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|12 x 2
  4. eHDPrep::example_ontology
    Example ontology as a network graph for semantic enrichment
    rda| rds
    tbl_graph
  5. MultiSEp::depMapCRISPRscores_subset
    Example CRISPR score input matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 1054
  6. MultiSEp::depMapMUT_small
    Example mutation data input matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 1299
  7. MultiSEp::depMapMUT_subset
    Example mutation data input matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|132 x 1738
  8. MultiSEp::depMapTissue_subset
    Example tissue data input matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|789 x 2
  9. MultiSEp::depMapXPR_small
    Example gene expression input matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11 x 1299
  10. MultiSEp::depMapXPR_subset
    Example gene expression input matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 1304
  11. MultiSEp::Formatted_MUTimpactMatrix
    The output of 'mts_formatMatrix()' function for an example dataset.
    csv| json| rda| rds
    list
  12. MultiSEp::mixModelClusters_depMapCRISPR
    Clusters of samples (cell lines) from the 'mts_mixModelCluster' function for a small dataset of DepMap CRISPR scores.
    csv| json| rda| rds
    list
  13. MultiSEp::mixModelClusters_depMapXPR
    Clusters output from the 'mts_mixModelCluster' function for a toy DepMap expression dataset.
    json| rda| rds
    list
  14. MultiSEp::mixModelClusters_vignette
    Clusters output from the 'mts_mixModelCluster' function for a DepMap expression data that is required for the vignette.
    json| rda| rds
    list
  15. MultiSEp::mRes
    Example results for the 'mts_Mutation' function.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3039 x 5
  16. MultiSEp::multisepCrisprList
    Example Multisep t-test CRISPR vs XPR results object.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1428 x 25
  17. MultiSEp::multisepList
    Example results from mts_clusterAvg()
    json| rda| rds
    list
  18. MultiSEp::MUT_impactMatrix
    Example mutation impact matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23 x 26